About
A computer scientist who treats software like a research instrument.
I'm Enes — Senior Scientist at Johnson & Johnson Innovative Medicine. I lead ML and computational biology programs in oncology and immunology, but my background spans medical robotics, computer vision, neuroscience, and open-source tools. I care about reproducibility, careful statistics, and shipping systems other people actually want to use.
I trained as a computer scientist in Istanbul and Munich. My first research years were in a robotics lab building real-time computer-vision systems for image-guided biopsy robots, then deep-learning pipelines for pharmaceutical quality control, and multi-omics integration in computational neuroscience.
I moved to Berlin for a PhD in computational biology at the Max Delbrück Center, working on spatial transcriptomics and the algorithms that let us reconstruct tissue from single-cell data — shipping open-source tools used by labs and industry.
Today I lead multi-omics projects in drug discovery, mentoring junior scientists and bridging computational, experimental, and clinical teams. I'm equally interested in roles that lean toward ML engineering, applied research leadership, or domain-bridging scientific work outside biology.
Education
Three chapters- 2019 — 2026 (exp.)
Ph.D. in Computational Biology
Humboldt University of Berlin · Max Delbrück Center
Thesis: Computational modelling and machine learning for spatial transcriptomics and cell–cell interactions. Focus: ML, bioinformatics, transcriptomics.
- 2016 — 2019
M.Sc. in Computer Science
Technical University of Munich
Thesis: Analysis of activity-dependent proteomic changes associated with homeostatic scaling. DAAD MSc Scholarship. Focus: ML, AI, bioinformatics.
- 2012 — 2016
B.Sc. in Computer Science
Ozyegin University, Istanbul
Thesis: A standalone application for a 2D ultrasound-guided medical robotic system. Focus: software development, medical robotics, computer vision.
Service
Community2022 — 2023
Helmholtz Juniors — Member
Elected representative for ~8,000 PhD students across the Helmholtz Association. Contributed to the 2021 PhD survey analysis and per-center reports.
2020 — 2023
MDC PhD Representatives — Awareness team
Worked on improving contracts, salaries, and working conditions for doctoral students at the Max Delbrück Center.